2003 Explorer door ajar

Now I've read the situation about the 2002 f250 but i had some more questions. I am having the same problem out of a 2003 explorer with the door ajar light flashing. Now one of my fellow workers installed the viper 791 but couldn't get the locks to work nor it to remote start, so i went behind it and added the wake up (and tapped the correct locks cuz he had them wrong), and fixed the remote start. It turns out that it didn't need the wake up so i disconnected it. I was wondering if adding the relay to wake up can damage the GEM in anyway? I followed dei to the t. So after she came back telling me it was happening, i checked all the doors and noticed the pass side door doesn't always trigger the door ajar light when opened, the others work fine. Does anyone know if the door ajar is common or separate w/ the doors.

should be common for all doors DOOR TRIGGER BLACK/ LIGHT BLUE (+)   IN DRIVERS KICK PANEL

I think the BLACK/ light blue is the dome supervision, they are separate from the door ajar.