operate turbo timer and remote start

Using this site I was able to install the compustar 2W900FMR(3000).  I installed the 507t and the 508D as well.  Initially, I programmed the remote start and it worked flawlessly and it still works.  I decided to program the turbo timer and after following the steps in the install manual was able to let it work-great!  However, I notice that if you activate the turbo timer, you cannot use the remote start because you need the "reservation mode" for a manual transmission(which I have-it's an evo 9 mr) and with the turbo timer, when you close the door, the engine is still running and you have to manually lock/arm the alarm by pressing the arm button unlike "reservation mode" where you engage the e-brake, take the key out-engine still running and close the door which automatically arm/lock the car and shuts the engine off.  I guess this is normal?