viper 690xv alarm problems

Hey everyone,I have a 04 Infiniti G35 manual transmission with the Viper 690xv installed on it. The other day when I went to disarm it like I usually do, the remote beeps but doesn't disarm it. I go in the house and grab my other remote and same thing. The remote beeps and the lights flash twice and beeps like it always does but the alarm led light is still blinking and the alarm goes off when I use the key to unlock the door and enter. The funny thing was that before, only the viper siren went off but this time around, the factory horn alarm was going off as well. I didn't know about using the valet switch to disarm it so I unplugged the alarm brain. When I plugged it back in, I could arm and disarm the alarm just like before but now, my trunk won't open both from the remote and from the car trunk release button as well as the doors won't lock and unlock from the remote or from the car's lock/unlock switch. Lastly, the passenger side window won't roll up or down at all now. Any ideas? Thanks guys.

First off....I would try unhooking the brain of the alarm and see if all the componants that are not work start working.  Then i would check the 12volt source.  Make sure that you are not drawing too many amps off of the wrong wire.  Last it sounds like the alarm may be defective.Where theres is a wire there's a way.