As far as I am concerned, there is no need for an alternator to battery fuse, EXCEPT to protect the cable in case it rubs bare or comes loose (from the alternator end).
Older cars never had them. I suspect they figured the same safety/security as the starter-motor cable. (No fuse; make it heavy enough and physically protected enough etc.)
I sarcastically wondered is fuses were introduced in a vain attempt to prevent Bosch alternators from blowing.
Others may have introduced it to protect their alternator's power diodes in cases of reversed battery connections. (Yet my mate's 1966 23A alternator survived SEVERAL reverse hits from his fully charged and brand new
incorrectly(!!) labeled battery terminals!)
My experience has been that reverse connections blow alternators with fuses, and does not blow alternators that do no have fuses.
As to protecting the cable or alternator from battery end shorts, alternators are supposed to be self limiting - their windings are normally designed for the magnetic saturation etc, and their diodes should be likewise rated.
But this morning I read of burning alternators due to bad batteries. Maybe a non-OEM alternator rewound for certain performance? Certainly HO alternators seem to have poor output at low RPM - I assume thicker but less windings for higher current capability. But what then of magnetic saturation etc?
Or are all
your alternators that bad?
Anyhow, my experience is that fuses do NOT protect alternators.
Hence I reckon you can skip the alternator to battery fuse.
And why have a fuse to the fusebox from the battery or alternator?
And why involve the fusebox anyhow? Surely you have specific distribution to you higher power loads?
But remember too that a fat wire with a short thin bit is still much better.
It's not the same as a restrictive water pipe that DOES choke water flow. The "extra loss" is merely its higher resistance (per length) times its short length.
The bigger risk is fusing, but if short enough, it shouldn't fuse because the thicker 0G conduct its heat away quickly. (Remember, cable current ratings are based on a "free length" of cable...)
Likewise the 0G will keep the short smaller gauge cooler compared to a longer piece, hence lower resistance....
But as usual, decide what your target is.
Usually it's big amps in the back rather than the battery.
Normally the battery only requires enough cable to carry 2 Amps - it's only for cranking that the cable is upscaled, and to a lesser extent the discharge-replacing current (which usually isn't more than a few tens of Amps for long anyhow.)
But then you have the thumpers - whatever it is that draws peak current. And if the alternator can't supply that, you are looking at (say) a 1.5V drop or more as the battery takes over.... Plus whatever IR drops along the distribution path from whatever power sources exist.
But yeah - that is a strange "professional" job. To go to the trouble of dropping resistance, only to add a resistance (the fuse) and more resistance (the longer loop of cable). And to actually create an insulation-chaffing in the process!
Professional used to mean quality.
These days it has been relegated to its literal "paid" meaning.
But I still prefer to crap my own pants for free. It might be just as warm, but it's cheaper and IMO doesn't stink as bad.