viper 791xv and Aftermarket Turbo Timer

I just finshed installing my Viper 791xv with flying colors.  I have a turbo timer made by Apexi.  My problem is that when its counting down, I cant arm the car unless I hold it down.  It will arm but will indicate the ignition sensor is being bypassed.  But when the timer is done counting down, the car will disarm on its own.how can I by pass this and have it armed regardless of my external Turbo timer counting down???

I have the same turbo timer as you and the 791.  The timer is pretty much useless now except for the a/f reading that I use it for and the volt meter.  Just set the countdown time to 0.00 on the timer and just use the 791 as your timer.  Press the AUX and remote start at the same time.  Then you will be able to arm the system.  BTW...What year is your civic?