92 mustang, scytek troubleshooting

so i'm on the last day of my out of town trip installing, and am having a few probs with the last car, a 92 mustang conv, alarm is a scytek visionguard w/smart window module.

1) having a major brain fart with the first, i know the lock system is a 5 wire, so it has been wired up as that, however the alarm manual says to wire the unlock as reverse polarity, anyone have a link to a diagram on this or can you explain how to fix the prob. I hooked it up as 5 wire, and hooked the lock/unlock up as stated in the manual, and apparently it was wrong cause the positive from the unlock started smelling a little funny.

2)the smart window module was installed, all switches tested at the drivers door prior to completing install to ensure correct wire routing. The system is wired to roll the windows up w/arm output. The drivers window rolls down instead of up, however the other 3 go up as wired.

Any and all help would be greatly appreciated, and please no " just search for it" answers as i've been utilizing the search button with no luck.

Thanks