Viper to Civic trouble

Hello all. Im new to the site. I just purchased a 4706 viper for my wifes 07 Civic. I was gonna install it and not tell her till Christmas. I'm having a hard time with the ignition wires. I was hoping somebody could help me get out.Thanks in advance fine people.

a) What sort of trouble? Ign. wires on that vehicle are extremely straight forward. b) Immobiliser by-pass?

Immo. Data 7-pin immobilizer connector 3 Light Green SW CAN 7-pin immobilizer connector 4 Pink Ignition Ignition switch 6 Blue 12 Volts Ignition switch 3 White Starter Ignition switch 1 Yellow Accessory 1 Ignition switch 4 Orange Accessory 2 Ignition switch 5 Red Parking Lights Headlight switch, BLACK/ White 12 pins 11 Gray Brake Brake switch 2 Light Green Hood Pin Hood switch 2 Light Blue

I've got that. I just wanted to double check. Its a 4706 with a dball2. While trying to remote start the engine cranks and trys to start. Just as soon as the starter cycle times out it kills all accessory power. The car only trys to run while the yellow starter wire is receiving power.

So you got my first problem solved. I had somehow got the remote start in a "flex relay setting". I'm guessing I accidently did that when I was learning how to opt out of the straight shift setting. Everything worked perfect. I went back in the shop tonight to route wires and mount boxes. Everything was coming along nicely. So when I got everything wound up and hit the remote start it wouldn't start. Just cranks but no fire. The immobilization light is on. If I insert the key the remote start works perfect. But the dball2 lights flash as programmed and working. With an analog meter the immobilizer wires are carrying a pulsing voltage with the key and with just the dball2. The 2 signals seem very similar with the dball2 signal being slightly stronger. The other wire is showing about 3.8 volts. I did have the main ground off twice while rerouting wires. Could that have flashed my dball2 and made it send a slightly different signal?