bypassing auto factory roll down switch

Ive recently installed a crimestopper CS-2014FM remote start and pager to a customer 98 lincoln navigator. Know im istalling window roll down modules, Autopage AC-78. For all four windows. I got both window modules hooked up. Everything works good but, when i activade aux 3 from alarm all windows go down except the driver door. I think that the auto factory window switch is not letting the driver roll down. Is there a way to bypass it or how would i wire it to make the driver door rool down? The module is a rool down when activade and rool up when arm. Wen arm all windows rool up. The only problem is rooling down the driver door any ideas?

Also he has one 6oo jensen hooked up as bass for a 10" kicker. Hes battery drains quick after playing 3 songs when the truck sits turned off. What would couse the battery to drain so quick? Is there a way to fix that problem? Any help would be much appreciated!

All my wires i got from the main switch driver door panel! So i should get the wires from the driver side and not from the master switch?

ok thanks ill try going to the motor, ill let you guys know how it when.