00 Audi S4 Alarm/Remote Start Problem

Ok I have a 2000 Audi S4 with some difficulties.  I installed a Viper 791 XV on it.

I installed it so when I lock the car the windows will close, and my auxilary button to open all my windows when i hold it down.  I hooked the disarm defeat wire up to the lock wire as well.  Everything else pretty much standard wire to wire.

The problem arises when, I remote start the car the front door unlocks.  When I hit the look button it does not do anything while remote started, however if hit the unlock button it will go down then back up twice.

A solution I have (kind of a hack way): Disconnect the factory siren and take off the disarm defeat wire, so when I remote start it the factory alarm will go off but only the parking lights will blink fastly. 

Does anyone have any solutions that I do not have to use my solution? I am at a loss of what else to do. 

Ahhh yes I did go as far as hooking that wire up, but it would try to start every time I locked my door!  My brain was working but I didn't htink about diode isolating it! 

As far as the connections, I did them in the kick panel..SHould I go to the lock/unlock switch in the door and run wires?  Thats what I am thinking I need to do.