doors unlock when remote starting

2003 jeep grand cherokee I have a clifford 50.7 same as a ciper 5901 using a db-jdlp jeep D/L alarm with bypass form omega research I noticed when I activate a remote start, the doors will unlocked automatically although the engine will dies and siren sounds if the doors are opened without disarming the alarm. Is there a way for Viper to use the locking system in option 1 without unlocking the door when it is remote started? thanks for any and all help

Can any one help me with this?

Some starter send unlock pulse ( or disarm pulse ) to disarm the factory alarm to allow car to start without setting off the factory alarm ( horn honk ).  Usually, there is second lock pulse after stat to rearm.   Look for rearm wire and hook up.