Commando RS-Combo Problem

I am putting the Commando Alarms RS-Combo (Alarm, Keyless Entry, and Remote Start) on my wife’s '96 Dodge Ram 1500 Ext Cab.  I hooked up the remote start stuff first, and then the alarm and they both worked fine when I tested them.  Then I hooked up the "reverse polarity door locks" and the starter interrupt relay they sent me.  After that, the locks and alarm worked fine, but the starter didn't.  I then realized that I had put the starter wire from the remote control module on the wrong side of the starter, so I moved it from the key side of the starter wire, to the starter side of that wire.  I tested it, and it worked fine.  When I came back the next day to tidy up all the wires and close up the dash panel, the truck would not start, and the battery was nearly dead.  I have tried jumping the battery to start it, and the motor turns over just fine, but will not start.  I am getting a spark, and I have fuel pressure coming out of the schrader valve.  So what did I do?  Even After I unhook all the connections, it still will not start.  Thanks

When you unhooked all the connections did you re-connect the starter wire together ? Wht did your battery go dead ?? Did you use any relays in the system other than the door lock and the starter disable ? Did you arm the system beofre you left the truck over night ?

I unhooked all the connections, but I left the starter relay in place on the starter wire,  I know it is working, becuase the motor turns over, if it was not, then the starter should not turn at all, right?  I have no idea why the battery went dead, I measured the current draw on the battery, and I was only drawing 0.04 amps.  I used no other relays other than the starter disable and the Door Lock Realy Module from Commando.  Yes, the system was armed, it arms itself after a few minutes of sitting idle after you close the door.   

Should I take the starter kill relay off the starter wire?  I do not see that this should make a difference becuase the relay is normally closed between the two ends of the starter wire.  I think the problem is somewhere else, but I just can't think where............???????????

If you unplugged everything already and the truck doesn't start then I can't see there being a problem. Is the unit out of the truck now ?

I got it running somehow, I think my problem was unrelated.  Actually I think it was a couple of problems together: leaving the door open for 8 hours or so while hooking up all the wires which left 5 or more light bulbs in the cab burning, and getting a tank of gas with water in it from the cheap gas station.  I also cranked the engine alot when it was about dead, and while trying jump start it.  I believe this collapsed the lifters from lack of oil pressure.  I finally got it started by pumping the accelerator alot and alot of cranking while jumping from my other truck.  Thanks for the help anyway, I was stumped, so was my dad, who is an Electrical Engineer. 

Good to hear that it wasn't an electrical problem with the installation..... in a way