arrow12/monkeysan: I've decided to completely redo the wiring when I deaden the doors. It may not help, but since it's obvious that the original installer took quite a few short cuts, it can't hurt either.
dwarren: Yeah, it probably is a case of user error. I'm pretty comfortable with using the multimeter method for setting gains. As far as all the speakers being in phase is concerned, I checked the wiring everywhere but behind the head unit where the speaker wires running from the amp are spliced into the factory wiring. I don't believe there's a phase problem, but if there is, I'll find it when I rewire the car. In the meantime, I'll try your suggestion for setting the crossovers. I also may take it to a pro if all else fails.
dzelaya: With the exception of the Alpine amp, I do feel pretty good about the equipment I have. The amp is probably fine, but I won't know for sure until I either get to the point where I'm happy with the overall sound or I try another amp, whichever comes first.
occurial: I tried using the amp's crossovers, but the overall sound of the system seemed to improve considerably when I switched them off and used the head unit's crossovers. (Even when using the same crossover points and slopes.) The head unit has two sound adjustment modes. The Normal Mode only allows you a single crossover point with a 12 db slope. The Pro Mode allows multiple crossover points and slopes but won't allow you to crossover the front speakers below 200hz. It's one of the few common complaints that Eclipse owners have about the deck.
Sedate: The components in the front are the JL Audio VR650-CSi and coaxials in the rear are the JL Audio VR650-CXi. I knew someone would call me on not being more specific about what I don't like about the overall sound of the system, but I'm not sure that I have enough first hand experience to specifically indentify it or put it into words. I'll give it a shot though.
I'm having a lot of trouble with the high frequencies. With most of the settings I've tried, they sound hollow and unnatural as though they're playing louder than the other frequencies. However, when I turn down the tweets (using the 0db, -1.5db, or -3db switch on the crossover) or try to lower the highs with the EQ, the music loses some life and sounds flat.
In the mid range, I can't seem to get the clarity I had before. With my original setup, the instruments were very distinct. I could easily pick up and follow an individual keyboard line or base line throughout a given song. With my current setup, it takes a lot more effort.
In the low range, the bass notes don't sound like notes. If I turn down the speakers and just listen to what's coming out of the sub, it seems like I 'm just hearing a jumble of low frequencies. Not only that, but it plays VERY low. With my headunit's volume turned up to 65 or 70 out of 80 and the front and rear speakers turned all the way down, I could barely hear the subwoffer output while driving home this evening. Based on what I've read (and heard) in other systems, that's doesn't seem right. Shouldn't I be able to clearly hear the sub's output under those circumstances?
I'm not sure if that describes what's bothering me about the system or not, but hopefully it's a start.
Thanks to everyone for your feedback so far.